Void‐Supercluster Alignments
نویسندگان
چکیده
منابع مشابه
Whole Genome Alignments Based On Local Alignments
Given the genomes (DNA) of two related species, one of the whole genome alignment tasks is to locate regions on the genomes that possibly contain genes conserved over the two species. Most of the existing whole genome alignment software tools, MUMmer (Delcher et al., 2002; Kurtz et al., 2004), MaxMincluster (Wong et al., 2004), and MSS (Chan et al., 2004), generate Maximal Unique Matches (MUMs)...
متن کاملAligning Alignments
While the area of sequence comparison has a rich collection of results on the alignment of two sequences, and even the alignment of multiple sequences, there is little known about the alignment of two alignments. The problem becomes interesting when the alignment objective function counts gaps, as is common when aligning biological sequences, and has the form of the sum-of-pairs objective. We b...
متن کاملArguing Over Ontology Alignments
In open and dynamic environments, agents will usually differ in the domain ontologies they commit to and their perception of the world. The availability of Alignment Services, that are able to provide correspondences between two ontologies, is only a partial solution to achieving interoperability between agents, because any given candidate set of alignments is only suitable in certain contexts....
متن کاملShapes of Alignments
We present a general approach for representing, composing, and computing alignments, based on the category theoretic notions of diagram, pushout, and colimit. This generalises the possible ‘shapes’ of alignments that have been introduced previously in similar approaches. We use the theory of institutions to represent heterogeneous ontologies, and show how the tool Hets can be employed to comput...
متن کاملStochastic pairwise alignments
MOTIVATION The level of sequence conservation between related nucleic acids or proteins often varies considerably along the sequence. Both regions with high variability (mutational hot-spots) and regions of almost perfect sequence identity may occur in the same pair of molecules. The reliability of an alignment therefore strongly depends on the level of local sequence similarity. Especially in ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: The Astrophysical Journal
سال: 2007
ISSN: 0004-637X,1538-4357
DOI: 10.1086/519449